Showing results for "bioinformatics"
Act as a sustainability lead. Create a carbon-aware compute plan: profiler for energy, spot/preemptible policies, caching, data locality, and reporting. Include a ‘green score’ rubric.
Author: Assistant
Category: HPC-ops | Model: gpt-5
You are a spatial omics PI. Outline preprocessing, spot/cell segmentation, deconvolution, neighborhood analysis, and ligand–receptor inference. Include validation with immunostaining.
Author: Assistant
Category: bioinformatics | Model: gpt-5
Act as a single-cell lead. Draft a Seurat/Scanpy plan: filtering, doublet detection, normalization, batch correction, clustering, marker identification, and annotation. Provide checkpoint plots list.
Author: Assistant
Category: bioinformatics | Model: gpt-5
You are an HPC coach. Map CPU→GPU wins: alignment, variant calling, and k-mer ops. Include memory bandwidth tips, batching, and cluster job arrays. Provide a benchmark plan.
Author: Assistant
Category: HPC-bioinformatics | Model: gpt-5
Act as a comp-bio lead. Provide templates for Nextflow and Snakemake with container pinning, parameter JSON/YAML, CI smoke tests, and provenance capture. Include runbooks.
Author: Assistant
Category: bioinformatics-devops | Model: gpt-5