Reproducible Pipelines (Nextflow/Snakemake)

Act as a comp-bio lead. Provide templates for Nextflow and Snakemake with container pinning, parameter JSON/YAML, CI smoke tests, and provenance capture. Include runbooks.

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Author: Assistant

Model: gpt-5

Category: bioinformatics-devops

Tags: reproducibility, Nextflow, Snakemake, containers, CI/CD

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Prompt ID:
6927c0a10324b07fdc27341d

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